Articles produced by members of the Plant Molecular Systematics Laboratory at UEFS
2024
- 116. Oliveira, R.P.; Ferreira, F.M.; Oliveira, I.L.C.; Dórea, M.C.; Lima, J.F.; Clark, L.G.; Welker, C.A.D. 2024. Long-term fieldwork in Brazil helps to unravel the diversity and evolution of the Neotropical Olyreae (Poaceae: Bambusoideae): an unexpected new and threatened genus in Parianinae. Botanical Journal of the Linnean Society 206: 181-200.
- 115. Almeida, R.F.; Alves, M.; van den Berg, C.; Pellegrini, M.O.O.; Gostel, M.R.; Roque, N.; 2024. Molecular phylogenetics and historical biogeography of subtribe Ecliptinae (Asteraceae, Heliantheae). Plants 13: 2817.
- 114. Almeida, R.F.; Francener, A.; Mamede, M.C.H.; van den Berg, C. 2024. Molecular phylogeny and historical biogeography of Byrsonima (Malpighiaceae) corroborates the Mid-Miocene origins of Neotropical Savannas. Diversity 16: 488.
- 113. Barrera-Rojas, C.H.; Nogueira, F.T.S.; van den Berg, C. 2024. Painting the plant body: pigment biosynthetic pathways regulated by small RNAs. New Phytologist xx: 1-10.
- 112. Brito, J.O.F.; Alves, A.M.; Portela, L.C.; van den Berg, C.; Pereira, S.M.; Gestinari, L.M.; Cassano, V.; Moura, C.W.; Gama, W.A. 2024. Phylogenetic analysis of the Cladophora coelothrix complex, including the description of the new genus Leliaertia (Cladophorales, Ulvophyceae). Phycologia 63: 11-23.
- 111. Huamantupa-Chuquimaco, I.; Maia, V.H.; Lima, H.C.; Lemes, M.; Snak, C.; Gregório, B.; Cardoso, S.R.S.; Queiroz, L.P.; Zartman, C.E.; Lewis, G.P.; James, E.K.; Dexter, K.G.; Pennington, T.; Simon, M.; Cardoso, D.B.O.S. 2024. A densely sampled molecular phylogeny of Tachigali (Leguminosae), an evolutionarily successful lineage of neotropical ant-housing canopy trees. Brazilian Journal of Botany 1: 1.
- 110. Lima, A.P.; Silva, J.R.S.; Siqueira, G.B.; van den Berg, C. 2024. Morphometric analyses as a tool for the delimitation of a species complex of rupicolous Cattleya orchids from the Brazilian campos rupestres of Minas Gerais and Bahia. Phytotaxa 672: 64-78.
- 109. Oliveira, F.G.; Santos, F.S.; Lewis, G.P.; Oliveira, R.P.; Queiroz, L.P. 2024. Reassessing the taxonomy of the Libidibia ferrea complex, the iconic Brazilian tree “pau‑ferro” using morphometrics and ecological niche modeling. Brazilian Journal of Botany 47: 1203-1219.
- 108. Oliveira,M.I.U.; Vieira, J.P.S.; van den Berg, C.; Funch, L.S.; Oliveira, R.P. 2024. Species delimitations in the Campomanesia xanthocarpa group (Myrtaceae): insights from molecular markers and taxonomy. Australian Systematic Botany 37: SB23032.
- 107. Santos, F.S.; Ribeiro, C.L.; Snak, C.; Fonseca-Cortés, A.; Cardoso, D.B.O.S.; Queiroz, L.P. 2024. Phylogeny, niche modelling and morphology unveil a new lianescent species of Sigmoidotropis (Leguminosae, Papilionoideae) across rainforest enclaves within Brazilian dry vegetation. Taxon 73: 1226-1238.
- 106. Silva, C.; Hillmann, J.C.; Acosta, J.M.; Oliveira, R.P.; Zuloaga, F.A. 2024. One more step into the resolution of Panicum (Poaceae) polyphyly: Drakkaria, a new segregate genus from neotropical Seasonally Dry Tropical Forests. Botanical Journal of the Linnean Society 2024: 1.
- 105. São Matheus, W.M.B.; Fernandes, M.F.; Queiroz, L.P.; Meireles, J.E.; Jardim, J.G.; Delgado-Salinas, A.; Dorado, O.; Lima, H.C.; Rodríguez,R.R.; González-Gutiérrez, P.A.; Lewis, G.P.; Wojciechowski, M.F.; Cardoso, D.B.O.S. 2024. Molecular phylogeny and divergence time of Harpalyce (Leguminosae, Papilionoideae), a lineage with amphitropical diversification in seasonally dry forests and savannas. Molecular Phylogenetics and Evolution 194: 108031.
- 104. Vieira, T.L.; Salazar, G.A.; van den Berg, C. 2024. Phylogeny of Prosthechea (Laeliinae, Orchidaceae) based on nrITS and plastid DNA sequences: Reassessing the lumper-splitter debate and shedding light on the evolution of this Neotropical genus. Taxon 73: 142-160.
2023
- 103. Almeira, R.F.; Morais, I.L.; Pellegrini, M.O.O.; van den Berg, C. 2023. Molecular phylogeny and character-mapping support the synonymy of Cordobia and Gallardoa in Mionandra (Malpighiaceae). Plant Ecology and Evolution 156: 352-364.
- 102. Carvalho, C.S.; Lima, H.C.; Lemes, M.R.; Zartman, C.E.; van den Berg, C.; García-Dávila, C.R.; Coronado, E.N.H.; Mader, M.; Paredes-Villanueva, K.; Tysklind, N.; Cardoso, D. 2023. A dated phylogeny of the Neotropical Dipterygeae clade reveals 30 million years of winged papilionate floral conservatism in the otherwise florally labile early-branching papilionoid legumes. Botanical Journal of the Linnean Societ 202: 449-475.
- 101. Gregório, B.S.; Carvalho, C.S.; Ramos, G.; Rocha, L.; Stirton, C.; Lima, H.C.; Zartman, C.E.; Lewis, G.P.; Torke, B.M.; Snak, C.; Higuita, H.A.D.; Queiroz, L.P.; Cardoso, D.B.O.S. 2023. A molecular phylogeny of the early-branching Genistoid lineages of papilionoid legumes reveals a new Amazonian genus segregated from Clathrotropis . Botanical Journal of the Linnean Societ 205: 1–14.
- 100. Silva, A.C.; Oliveira, L.M.; Pastore, J.F.; van den Berg, C.; Soares, T.L.; Souza, E.H. 2023. Genetic diversity and population structure of Eplingiella species (Lamiaceae) using ISSR markers. Genetic Resources and Crop Evolution 70: 2801–2813.
2022
- 99. Almeida, R.F.; van den Berg, C. 2022. Biogeography and character-mapping of Hiptage (Malpighiaceae) corroborate Indochina’s rainforests as one of the main sources of plant diversity in southeastern Asia. Nordic Journal of Botany 2022: e03464.
- 98. Borger, L.M.; Inglis, P.M.; Simon, M.F.; Ribeiro, P.G.; Queiroz, L.P.; 2022. Misleading fruits: The non-monophyly of Pseudopiptadenia and Pityrocarpa supports generic re-circumscriptions and a new genus within mimosoid legumes. . Phytokeys 205: 239-259.
- 97. Buzatto, C.R.; Nervo, M.H.; Sanguinetti, A.; van den Berg, C.; Singer, R.B. 2022. Efficient pollination and high reproductive success in two Brazilian Spiranthinae orchids: Insights on the evolutionary history of pollination within the Pelexia clade. Plant Species Biology 37: 182-196.
- 96. Choi, I.-S.; Cardoso, D.B.O.S.; Queiroz, L.P.; Lima, H.C.; Lee, C.; Ruhlman, T.A.; Jansen, R.K.; Wojciechowski, M.F. 2022. Highly resolved Papilionoid Legume phylogeny based on plastid phylogenomics. Frontiers in Plant Science 13: 1-22.
- 95. Costa, M.A.; Araújo, E.F.; van den Berg, C.; Bastos, C.A. 2022. CRISPR/Cas9 technology applied to the Drosophila melanogaster biological model. Brazilian Journal of Development 8: 27610-27642.
- 94. Feijó, E.V.R.S.; Barbosa, B.L.; van den Berg, C.; Oliveira, L.M. 2022. Genetic diversity of Lippia origanoides Kunth. in natural populations using ISSR markers. Ciência e Agrotecnologia 46: e000822.
- 93. Hernández-Gutiérrez, R.; van den Berg, C.; Mendoza, C.G.; Cevallos, M.P.; Freire M., E.; Lemmon, E.M.; Lemmon, A.R. 2022. Localized phylogenetic discordance among nuclear loci due to incomplete lineage sorting and introgression in the family of cotton and cacao (Malvaceae). Frontiers in Plant Science 13: 850521.
- 92. Lima, A.G.; Paula-Souza, J.; Ringelberg, J.; Simon, M.; Queiroz, L.P.; Borges, L.P.; Mansano, V.; Souza, V.C.; Scalon, V.; 2022. New segregates from the Neotropical genus Stryphnodendron (Leguminosae, Caesalpinioideae, mimosoid clade). Phytokeys 205: 203-237.
- 91. Osborne, O.G.; Dobreva, M.P.; Papadopulos, A.S.T.; Moura, M.S.B.; Brunello, A.T.; Queiroz, L.P.; Pennington, R.T.; Lloyd, J.; Savolainen, V. 2022. Mapping the root systems of individual trees in a natural community using genotyping-by-sequencing. New Phytologist 238: 1305-1317.
- 90. Pessoa, E.M.; Cordeiro, J.M.P.; Felix, L.M.; Lemes, P.; Viruel, J.; Alves, M.; Chase, M.W.; van den Berg, C. 2022. The role of Quaternary glaciations in shaping biogeographic patterns in a recently evolved clade of South American epiphytic orchids. Botanical Journal of the Linnean Societ 199: 252-266.
- 89. Ringelberg, J.J.; Koenen, E.J.M.; Iganci, J.; Queiroz, L.P.; Murphy, D.J.; Gaudeul, M.; Bruneau, A.; Luckow, M.; Lewis, G.P.; Hughes, C. 2022. Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae). Phytokeys 205: 3-58.
- 88. Vieira, J.P.S.; Selbach-Schnadelbach, A.; Braz, M.; Ribeiro, P.L.; van den Berg, C.; Oliveira, R.P. 2022. Coalescent-based species delimitation in herbaceous bamboos (Bambusoideae, Olyreae) from Eastern Brazil: Implications for taxonomy and conservation in a group with weak morphological divergence coupled with low genetic diversity. Plants 12: 107.
2021
- 87. Almeida, R.F.; van den Berg, C. 2021. Molecular phylogeny and character mapping support generic adjustments in the Tetrapteroid clade (Malpighiaceae). Nordic Journal of Botany 2021: e02876.
- 86. Carvalho, M.L.S.; Jesus, I.S.D.; Bezerra, H.B.; Oliveira, I.L.C.; van den Berg, C.; Schnadelbach, A.S.; Clark, L.G.; Oliveira, R.P. 2021. Phylogenetics of Piresia (Poaceae: Bambusoideae) reveals unexpected generic relationships within Olyreae with taxonomic and biogeographic implications. Taxon 70: 492-514.
- 85. Oliveira, M.I.U.; Vieira, J.P.S.; van den Berg, C.; Oliveira, R.P.; Funch, L.S. 2021. Understanding molecular relationships in Campomanesia Ruiz & Pav. (Myrtaceae): emphasizing the C. xanthocarpa complex based on multiple accessions. Brazilian Journal of Botany 44: 917-927.
- 84. Pessoa, E.M.; Cordeiro, J.M.P.; Felix, L.P.; Almeida, E.M.; Costa, L.; Nepomuceno, A.; Souza, G.; Chase, M.W.; Alvez, M.; van den Berg, C. 2021. Too many species: morphometrics, molecular phylogenetics and genome structure of a Brazilian species complex in Epidendrum (Laeliinae; Orchidaceae) reveal fewer species than previously thought. Botanical Journal of the Linnean Societ 195: 161-188.
2020
- 83. Oliveira, I.L.C.; Matos, A.O.; Silva, C., Carvalho, M.L..S; Tyrrell, C.D.; Clark, L.G.; Oliveira, R.P. 2020. Delving deeper into the phylogenetics of the herbaceous bamboos (Poaceae, Bambusoideae, Olyreae): evaluation of generic boundaries within the Parodiolyra/Raddiella clade uncovers a new genus.. Botanical Journal of the Linnean Society 192: 61-81.
- 82. Oliveira, R.P.; Silva, C. ; Welker, C.A.D.; Dorea, M.C. ; Oliveira, I.L.C.; Vieira, J.P.S.; Leite, K.R.B.; Clark L.G. 2020. Reinterpreting the phylogenetic position, systematics and distribution of the Raddia-SucreaM/i> lineage (Poaceae, Olyrinae), with a new monotypic and endangered herbaceous bamboo genus from Brazil. Botanical Journal of the Linnean Society 192: 34-60.
- 81. Vieira, J.P.S.; Schnadelbach, A.S.; Hughes, F.M.; Jardim, J.G.; Clark, L.G.; Oliveira, R.P. 2020. Ecological niche modelling and genetic diversity of Anomochloa marantoidea (Poaceae): filling the gaps for conservation in the earliest-diverging grass subfamily. Botanical Journal of the Linnean Society 192: 258-280.
- 80. Almeida, R.F.; van den Berg, C. 2020. Biogeography of Stigmaphyllon (Malpighiaceae) and a meta-analysis of vascular plant lineages diversified in the Brazilian Atlantic Rainforests point to the Late Eocene origins of this megadiverse biome. Plants 9: 1569.
- 79. Buzatto, C.R.; Singer, R.B.; van den Berg, C.; Souza, E.R.; Mota, B.M. 2020. Capanemia (Oncidiinae): an orchid genus revised and simplified. Plant Systematics and Evolution 306: 25.
- 78. Cauz-Santos, L.A.; Costa, Z.P.; Callot, C.; Cauet, S.; Zucchi, M.I.; Bergès, H.; van den Berg, C.; Vieira, M.L.C. 2020. A repertory of rearrangements and the loss of an inverted repeat region in Passiflora chloroplast genomes. Genome Biology and Evolution 12: 1841-1857.
- 77. Mendoza, C.G.; Jost, M.; Hágsater, E.; Magallón, S.; van den Berg, C.; Lemmon, E.M.; Lemmon, A.R.; Salazar, G.A.; Wanke, S. 2020. Target nuclear and off-target plastid hybrid enrichment data inform a range of evolutionary depths in the orchid genus Epidendrum. Frontiers in Plant Science 10: 1761.
- 76. Nazareno, A.G.; Menini Neto, L.; Buzatti, R.S.O.; van den Berg, C.; Forzza, R.C. 2020. Four raised to one equals one: A genetic approach to the Pseudolaelia vellozicola complex does not follow a math rule. Ecology and Evolution 10: 4562–4569.
- 75. Silva, C.; Snak, C.; Davidse, G.; van den Berg, C.; Oliveira, R.P. 2020. Assessing the molecular diversity of Hildaea (Poaceae, Panicoideae): reaching a compromise between the splitter and the lumper. Botanical Journal of the Linnean Societ 192: 121-147.
2019
- 74. Ferreira, F.M.; Oliveira, R.P.; Welker, C.; Dórea, M.C.; Lima, A.L.; Oliveira, I.L.C.; Santos, F.A.R.; van den Berg, C.; Clark, L. 2019. Phylogenetic relationships within Parianinae (Poaceae: Bambusoideae: Olyreae) with emphasis on Eremitis: Evidence from nuclear and plastid DNA sequences, macromorphology, and pollen ectexine patterns. Molecular Phylogenetics and Evolution 139: 106541.
- 73. Marinho, L.C.; Kai, L.; Duan, X.; Ruhfel, B.R.; Fiaschi, P.; Amorim, A.M.; van den Berg, C.; Davis, C.C. 2019. Plastomes resolve generic limits within tribe Clusieae (Clusiaceae) and reveal the new genus Arawakia. Molecular Phylogenetics and Evolution 134: 142-151.
- 72. Menini Neto, L.; van den Berg, C.; Forzza, R. 2019. Linear and geometric morphometrics as tools to resolve species circumscription in the Pseudolaelia vellozicola complex (Orchidaceae, Laeliinae). Plant Ecology and Evolution 152(1): 53-67.
- 71. Pastore, J.F.B.; Abbott, J.R.; Neubig, K.M.; van den Berg, C.; Mota, M.C.A.; Cabral, A.; Whitten, W.M. 2019. Phylogeny and biogeography of Polygala (Polygalaceae). Taxon : .
- 70. Silva, C.; Snak, C.; Davidse, G.; van den Berg, C.; Oliveira, R.P. 2019. Assessing the molecular diversity of Hildaea (Poaceae, Panicoideae): reaching a compromise between the splitter and the lumper. Botanical Journal of the Linnean Society : .
2018
- 69. Vidal, K.V.A>; Welker, C.A.D.; Mota, A.C.; Oliveira, I.L.C.; Clark, L.G.; Oliveira, R.P. 2018. A new species of Chusquea subg. Chusquea (Poaceae-Bambusoideae-Bambuseae) from Minas Gerais, Brazil: morphological evidence and phylogenetic placement within the Euchusquea clade. Phytotaxa 365: 73-88.
2017
- 68. Oliveira, R.P.; Jesus-Junior, L.A.; Mota, A.C.; Silva, C. 2017. The end of a mystery: transferring Streptostachys robusta to Ichnanthus (Poaceae, Paspaleae) based on DNA sequences, morphology and leaf anatomy. Phytotaxa 326: 159-174.
- 67. Silva, C.; Besnard, G.; Snard, G.; Piot, A; Razanatsoa, J.; Oliveira, R.P.; Voronstsova, M.S. 2017. Museomics resolve the systematics of an endangered grass lineage endemic to north-western Madagascar. Annals of Botany 119: 339-351.
2016
- 66. Batista, J.A.N.; Vale, A.A.; Carvalho, B.M.; Proite, K.; Ramalho, A.J.; Munhoz, A.C.D.; van den Berg, C.; Bianchetti, L.B. 2016. Four new species in Habenaria (Orchidaceae) from the Espinhaço Range, Brazil. Systematic Botany 41: 275-292.
- 65. López-Roberts, M.C.; Barbosa, A.R.; Queiroz, L.P.; van den Berg, C. 2016. Microsatellite markers for Senna spectabilis var. excelsa (Caesalpinioideae, Fabaceae). Applications in Plant Sciences 4: 1500062.
- 64. López-Roberts, M.C.; van den Berg, C. 2016. Transferability of microsatellite markers in four species of Masdevallia (Orchidaceae, Pleurothallidinae) endemic to mountain cloud forests of the Bolivian Andes: a phylogenetic approach. Brazilian Journal of Botany 39: xxx-xxx.
- 63. Peraza-Flores, L; Carneváli, GC, van den Berg, C 2016. A molecular phylogeny of the Laelia alliance (Orchidaceae) and a reassessment of Laelia and Schomburgkia. Taxon 65: 1249-1262.
- 62. Rando, J.G.; Zuntini, A.R.; Conceição, A.S.; van den Berg, C.; Pirani, J.R.; Queiroz, L.P. 2016. Phylogeny of Chamaecrista ser. Coriaceae (Leguminosae) unveils a lineage recently diversified in Brazilian Campo Rupestre vegetation. International Journal of Plant Sciences 177: 3-17.
2015
- 61. Machado, M.C.; Carvalho, P.C.L.; van den Berg, C. 2015. Domestication, hybridization, speciation, and the origins of an economically important tree crop of Spondias (Anacardiaceae) from the Brazilian Caatinga dry forest. Neodiversity 8: 8-49.
- 60. Rodrigues, J.F.; van den Berg, C.; Abreu, A.G.; Novello, M.; Veasey, E.A.; Oliveira, G.C.X.O.; Koehler, S. 2015. Species delimitation of Cattleya coccinea and C. mantiqueirae (Orchidaceae): insights from phylogenetic and population genetics analyses. Plant Systematics and Evolution 301: 1345-1359.
- 59. Silva, C.; Snak, C.; Selbach-Schnadelbach, A.; van den Berg, C.; Oliveira, R.P. 2015. Phylogenetic relationships of Echinolaena and Ichnanthus within Panicoideae (Poaceae) reveal two new genera of tropical grasses. Molecular Phylogenetics and Evolution 93: 212-233.
- 58. Vivas, C.V., van den Berg, C., Queiroz, L.P., Gaiotto, F.A. 2015. Development of microsatellite markers in Moldenhawera blanchetiana and their transferability to M. luschnathiana (Fabaceae). Conservation Genetics Resources 7: 255-257.
2014
- 57. Almeida, P.R.M., van den Berg, C., Góes-Neto, A. 2014. Epulorhiza amonilioides sp.nov.: a new anamorphic species of orchid mycorrhiza from Brazil. Neodiversity 6: 1-10.
- 56. Lavor, P., van den Berg, C., Jacobi, C.M., Carmo, F.F., Versieux, L.M. 2014. Population genetics of the endemic and endangered Vriesea minarum (Bromeliaceae) in the Iron Quadrangle, Espinhaço Range, Brazil. American Journal of Botany 101: 1167-1175.
- 55. Oliveira, R.P., Clark, L.G., Schnadelbach, A.S., Monteiro, S.H.N., Borba, E.L., Longhi-Wagner, H.M., van den Berg, C. 2014. A molecular phylogeny of Raddia and its allies within the tribe Olyreae (Poaceae, Bambusoideae) based on noncoding plastid and nuclear spacers. Molecular Phylogenetics and Evolution 78: 105-117.
- 54. Amorim, J.S., Tarazi, R., Rodrigues, P.S., Tsai, S.M., van den Berg, C., Gaiotto, F.A. 2014. Development of microsatellite primers for Senna multijuga (Fabaceae): a pioneer species from the Brazilian Atlantic forest. Conservation Genetics Resources 6: 569-570.
- 53. Nogueira, R.E., van den Berg, C., Pereira, O.L., Kasuya, M.C.M. 2014. Isolation and molecular characterization of Rhizoctonia-like fungi associated with orchid roots in the Quadrilátero Ferrífero and Zona da Mata regions of the state of Minas Gerais, Brazil. Acta Botanica Brasilica 28: 298-300.
- 52. Ribeiro, P.L., Rapini, A., Damascena, L.S., van den Berg, C. 2014. Plant diversification in the Espinhaço Range: Insights from the biogeography of Minaria (Apocynaceae). Taxon 63: 1253-1264.
- 51. Rodrigues, J.F., van den Berg, C., Abreu, A.G., Novello, M., Veasey, E.A., Oliveira, G.C.X.O., Koehler, S. 2014. Species delimitation of Cattleya coccinea and C. mantiqueirae (Orchidaceae): insights from phylogenetic and population genetics analyses. Plant Systematics and Evolution online: online.
- 50. Salazar, G.A., van den Berg, C., Popovkin, A. 2014. Phylogenetic relationships of Discyphus scopulariae (Orchidaceae, Cranichideae) inferred from plastid and nuclear DNA sequences: evidence supporting recognition of a new subtribe, Discyphinae. Phytotaxa 173: 127-139.
- 49. Vivas, C.V., Moraes, R.C.S., Alves-Araújo, A., Alves, M., Mariano-Neto, E., van den Berg, C., Gaiotto, F.A. 2014. DNA barcoding in Atlantic Forest plants: What is the best marker for Sapotaceae species identification?. Genetics and Molecular Biology 37: 662-670.
- 48. van den Berg, C. 2014. Reaching a compromise between conflicting nuclear and plastid phylogenetic trees: a new classification for the genus Cattleya (Epidendreae; Epidendroideae; Orchidaceae). Phytotaxa 186: 75-86.
2013
- 47. Almeida, P.R.M., López-Roberts, M.C., Vigna, B.B.Z., Souza, A.P., Góes-Neto, A., van den Berg, C. 2013. Microsatellite markers for the endangered orchids Cattleya labiata Lindl. and C. warneri T.Moore (Orchidaceae). Conservation Genetics Resources 5: 791-794.
- 46. Cardoso, D.B.O.S., Queiroz, L.P., Lima, H.C., Suganuma, E., van den Berg, C., Lavin, M. 2013. A molecular phylogeny of the Vataireoid legumes underscores floral evolvability that is general to many early-branching Papilionoid legumes. American Journal of Botany 100 (2): 403-421.
- 45. Ferreira, F.M., van den Berg, C., Hollowell, V.C., Oliveira, R.P. 2013. Parianella (Poaceae, Bambusoideae): morphological and biogeographical information reveals a new genus of herbaceous bamboos from Brazil. Phytotaxa 77 (2): 27-32.
- 44. Lavor, P., van den Berg, C., Versieux, L.M. 2013. Transferability of 10 nuclear microsatellite primers to Vriesea minarum (Bromeliaceae), a narrowly endemic and threatened species from Brazil. Brazilian Journal of Botany 36 (2): 165-168.
- 43. López-Roberts, M.C., Queiroz, L.P., van den Berg, C. 2013. Development of microsatellite markers in Cratylia mollis and their transferability to C. argentea (Fabaceae) . Applications in Plant Sciences 1 (10): 1300015.
- 42. Rodrigues, L., Póvoa, O., van den Berg, C., Figueiredo, A.C., Moldão, M., Monteiro, A. 2013. Genetic diversity in Mentha cervina based on morphological traits, essential oils profile and ISSRs markers. Biochemical Systematics and Ecology 51: 50-59.
- 41. Batista, J.A.N., Borges, K.S., Faria, M.W.F., Proite, K., Ramalho, A.J., Salazar, G.A., van den Berg, C. 2013. Molecular phylogenetics of the species-rich genus Habenaria (Orchidaceae) in the New World based on nuclear and plastid DNA sequences. Molecular Phylogenetics and Evolution 67: 95-109.
- 40. Moraes, R.C.S., Vivas, C.V., Oliveira, F.A., Menezes, I.P.P., van den Berg, C., Gaiotto, F.A. 2013. Microsatellite markers for an endemic Atlantic Forest tree, Manilkara multifida (Sapotaceae). AOB Plants 5: plt006.
- 39. Rodrigues, L., van den Berg, C., Póvoa, O., Monteiro, A. 2013. Low genetic diversity and significant structuring in the endangered Mentha cervina populations and its implications for conservation. Biochemical Systematics and Ecology 50: 51-61.
- 38. Santos, M.R., Garcia, F.C.P., van den Berg, C., Taylor, N.P., Machado, M.C. 2013. Proyectos: Filogenia molecular, taxonomía, biogeografia e conservação de Discocactus Pfeiff. (Cactaceae). Boletín de la Sociedad Latinoamericana y del Caribe de Cactáceas y otras suculentas 10 (1): 2-5.
- 37. Souza, E.R., Lewis, G.P., Forest, F., Schnadelbach, A.S., van den Berg, C., Queiroz, L.P. 2013. Phylogeny of Calliandra (Leguminosae: Mimosoideae) based on nuclear and plastid molecular markers. Taxon 62 (6) : 1200-1219.
- 36. Trovó, M., Andrade, M.J.G., Sano, P.T., Ribeiro, P.L., van den Berg, C. 2013. Molecular phylogenetics and biogeography of Neotropical Paepalanthoideae with emphasis on Brazilian Paepalanthus (Eriocaulaceae). Botanical Journal of the Linnean Society 171: 225-243.
2012
- 35. Chiron, G.R., Guiard, J., van den Berg, C. 2012. Phylogenetic relationships in Brazilian Pleurothallis sensu lato (Pleurothallidinae, Orchidaceae): evidence from nuclear ITS rDNA sequences. Phytotaxa 46: 34-58.
- 34. Giuletti, A.M., Andrade, M.G.M., Scatena, V.L., Trovó, M., Coan, A.I., Sano, P.T., Santos, F.A.R., Borges, R.L.B., van den Berg, C. 2012. Molecular phylogeny, morphology and their implications for the taxonomy of Eriocaulaceae. Rodriguésia 63 (1): 1-19.
- 33. López-Roberts, M.C., Almeida, P.R.M., Oliveira, E.J.F., van den Berg, C. 2012. Microsatellite marker development for the threatened orchid Masdevallia solomonii (Orchidaceae). American Journal of Botany 99 (2): e66-e68.
- 32. Oliveira, F.A., Tarazi, R., Menezes, I.P.P., van den Berg, C., Tsai, S.M., Gaiotto, F.A. 2012. Microsatellite markers for Plathymenia reticulata (Leguminosae). American Journal of Botany 60: e391-e393.
2011
- 31. Andrade, M.J.G., Giulietti, A.M., Harley, R.M., van den Berg, C. 2011. Blastocaulon (Eriocaulaceae), a synonym of Paepalanthus: Morphological and molecular evidence. Taxon 60 (1): 178-184.
- 30. Pastore, J.F.B., Harley, R.M., Forest, F., Paton, A., van den Berg, C. 2011. Phylogeny of the subtribe Hyptidinae (Lamiaceae tribe Ocimeae) as inferred from nuclear and plastid DNA. Taxon 60 (5): 1317-1329.
- 29. Smidt, E.C., Borba, E.L., Gravendeel, B., Fischer, G.A., van den Berg, C. 2011. Molecular phylogeny of the Neotropical sections of Bulbophyllum (Orchidaceae) using nuclear and plastid spacers. Taxon 60 (4): 1050-1064.
2010
- 28. Andrade, I.M., Mayo, S.J., Kirkup, D., van den Berg, C. 2010. Elliptic Fourier Analysis of leaf outline shape in forest fragment populations of Anthurium sinuatum and A. pentaphyllum (Araceae) from Northeast Brazil. Kew Bulletin 65: 1-18.
- 27. Andrade, M.J.G., Giuletti, A.M., Rapini, A., Queiroz, L.P., Conceição, A.S., Almeida, P.R.M., van den Berg, C. 2010. A comprehensive phylogenetic analysis of Eriocaulaceae: Evidence from nuclear (ITS) and plastid (psbA-trnH and trnL-F) DNA sequences. Taxon 59 (2) : 379-388.
- 26. Higgins, W.E., van den Berg, C. 2010. The New Cattleyas. Orchids : 344-345.
- 25. Monteiro, S.H.N., Selbach-Schnadelbach, A., Oliveira, R.P., van den Berg, C. 2010. Molecular phylogenetics of Galeandra (Orchidaceae: Catasetinae) based on plastid and nuclear DNA sequences. Systematic Botany 36 (3): 476-486.
- 24. Parra, L.R., Giulietti, A.M., Andrade, M.J.G., van den Berg, C. 2010. Reestablishment and new circumscription of Comanthera (Eriocaulaceae). Taxon 59 (4): 1135-1146.
2009
- 23. Andrade, I.M.; Mayo, S.J.; van den Berg, C.; Fay, M.F.; Chester, M.; Lexer, C.; Kirkup, D. 2009. Genetic variation in natural populations of Anthurium sinuatum and A. pentaphyllum var. pentaphyllum (Araceae) from north-east Brazil using AFLP molecular markers. Botanical Journal of the Linnean Society 159: 88-105.
- 22. CBOL Plant Working Group (includes C. van den Berg) 2009. A DNA barcode for land plants. Proceedings of the National Academy of Sciences U.S.A. (PNAS) 106: 12794-12797.
- 21. Chiron, G.R.; Oliveira, R.P.; Santos, T.M.; Bellvert, F.; Bertrand, C.; van den Berg, C. 2009. Phylogeny and evolution of Baptistonia (Orchidaceae, Oncidiinae) based on molecular analyses, morphology and floral oil evidences. Plant Systematics and Evolution 281: 35-49.
- 20. Conceição, A.S.; Queiroz, L.P.; Lewis, G.P.; Andrade, M.J.G.; Almeida, P.R.M.; Schnadelbach, A.S.; van den Berg, C. 2009. Phylogeny of Chamaecrista Moench (Leguminosae-Caesalpinioideae) based on nuclear and chloroplast DNA regions. Taxon 58: 1168-1180.
- 19. van den Berg, C. 2009. Nota técnica: Bancos de DNA de Plantas. Publicação avulsa Ministério da Ciência e Tecnologia 1: 1-10.
- 18. van den Berg, C.; Higgins, W.E.; Dressler, R.L.; Whitten, M.W.; Soto-Arenas, M.A.; Chase, M.W. 2009. A phylogenetic study of Laeliinae (Orchidaceae) based on combined nuclear and plastid DNA sequences. Annals of Botany 104: 417-430.
2008
- 17. Oliveira, R.P.; Borba, E.L.; Wagner, H.M.L. 2008. Morphometrics of herbaceous bamboos of the Raddia brasiliensis complex (Poaceae ? Bambusoideae): implications for the taxonomy of the genus and new species from Brazil.. Plant Systematics and Evolution 270: 159-182.
- 16. Andrade, I.M., Mayo, S.J., Kirkup, D., van den Berg, C. 2008. Comparative morphology of populations of Monstera Adans. (Araceae) from natural forest fragments in Northeast Brazil using elliptic Fourier Analysis of leaf outlines. Kew Bulletin 63: 193–211.
- 15. Ribeiro, P.L., Borba, E.L., Smidt, E.C., Lambert, S.M., Schnadelbach, A.S., van den Berg, C. 2008. Genetic and morphological variation in the Bulbophyllum exaltatum (Orchidaceae) complex occurring in the Brazilian ‘‘campos rupestres’’: implications for taxonomy and biogeography. Plant Systematics and Evolution 270: 109-137.
2007
- 14. Almeida, P.R.M., van den Berg, C., Góes-Neto, A. 2007. Morphological and molecular characterization of species of Tulasnella (Homobasidiomycetes) associated with Neotropical plants of Laeliinae (Orchidaceae) occurring in Brazil. Lankesteriana 7: 22-27.
- 13. Andrade, I.M., Mayo, S.J., van den Berg, C., Fay, M.F., Chester, M., Lexer, C., Kirkup, D. 2007. A Preliminary Study of Genetic Variation in Populations of Monstera adansonii var. klotzschiana (Araceae) from North-East Brazil, Estimated with AFLP Molecular Markers. Annals of Botany 100: 1143-1154.
- 12. Chase, M.W., Cowan, R.S., Hollingsworth, P.M., van den Berg, C., Madriñán, S., Petersen, G., Seberg, O., Jørgsensen, T., Cameron, K.M., Carine, M., Pedersen, N., Hedderson, T.A.J., Conrad, F., Salazar, G., Richardson, J.E., Hollingsworth, M.L., Barraclough, T.G., Kelly, L., Wilkinson, M. 2007. A proposal for a standardised protocol to barcode all land plants. Taxon 56: 295-299.
- 11. Rapini, A., van den Berg, C., Liede-Schumann, S. 2007. Diversification of Asclepiadoideae (Asclepiadaceae) in the New World. Annals of the Missouri Botanical Garden 94: 407-422.
- 10. Ribeiro, P.L., Borba, E.L., Smidt, E.C., Lambert, S.M., Selbach-Schnadelbach, A., van den Berg, C. 2007. Genetic and morphological variation in the Bulbophyllum exaltatum (Orchidaceae) complex occurring in the Brazilian "Campos Rupestres": implications for taxonomy and biogeography. Lankesteriana 7: 342-346.
- 9. Smidt, E.C., Silva-Pereira, V., Borba, E.L., van den Berg, C. 2007. Richness, distribution and important areas to preserve Bulbophyllum in Neotropics. Lankesteriana 7: 107-113.
2006
- 8. Azevedo, C.O.; Borba, E.L. van den Berg, C. 2006. Evidence of natural hybridization and introgression in Bulbophyllum involutum Borba, Semir & F. Barros and B. weddellii (Lindl.) Rchb. f. (Orchidaceae) in the Chapada Diamantina, Brazil, by using allozyme markers. Revista Brasileira de Botânica 29 (3): 415-421.
2005
- 7. van den Berg, C. 2005. Nomenclatural notes on Laeliinae (Orchidaceae) - IV. New combinations in Laelia and Sophronitis. Kew Bulletin 59: 565-567.
- 6. van den Berg, C.; Goldman, D.H.; Freudenstein, J.V.; Pridgeon, A.M.; Cameron, K.M.; Chase, M.W. 2005. An overview of the phylogenetic relationships of the Epidendroideae inferred from multiple DNA regions and recircumscription of Epidendreae and Arethuseae (Orchidaceae). American Journal of Botany 92(4): 613-624.
2004
- 5. Freudenstein, J.V.; van den Berg, C.; Goldman, D.H.; Kores, P.J.; Molvray, M.; Chase, M.W. 2004. An expanded plastid DNA phylogeny of Orchidaceae and analysis of jackknife branch support strategy. American Journal of Botany 91: 149-157.
- 4. Goldman, D.H.; Jansen, R.K.; van den Berg, C.; Leitch, I.; Fay, M.F.; Chase, M.W. 2004. Molecular and cytological examination of Calopogon (Orchidaceae, Epidendroideae): circumscription, phylogeny, polyploidy, and possible hybrid speciation. American Journal of Botany 91: 707-723.
- 3. Gravendeel, B.; Eurlings, M.C.M.; van den Berg, C.; Cribb, P.J. 2004. Phylogeny of Pleione (Orchidaceae) and Parentage Analysis of its Wild Hybrids Based on Plastid and Nuclear Ribosomal ITS Sequences and Morphological Data. Systematic Botany 29: 50-63.
2003
- 2. Higgins, W.E.; van den Berg, C.; Whitten, W.M. 2003. A combined molecular phylogeny of Encyclia (Orchidaceae) and relationships within Laeliinae. Selbyana 24: 165-179.
2002
- 1. Borba, E.L.; Shepherd, G.J.; van den Berg, C.; Semir, J. 2002. Floral and vegetative morphometrics of five Pleurothallis (Orchidaceae) species: correlation with taxonomy, phylogeny, genetic variability and pollination systems. Annals of Botany 90: 219-230.
Book Chapters produced by members of the Plant Molecular Systematics Laboratory at UEFS
2013
- 4. van den Berg, C. 2013. Promiscuidade generalizada em Cattleya (Orchidaceae): importância da hibridação e introgressão na evolução do gênero. In: Oliveira, G.C.X.O., Bandel, G., Veasey, E.A., Pinheiro, J.B., Koehler, S., Azevedo, R.A. eds.. Evolução, Sistemática e Biologia de Populações de Orquídeas. Departamento de Genética/ESALQ. pp. 18-24.
2011
- 3. Higgins, W.E., van den Berg, C. 2011. Holomorphology of the Guarianthe complex . In: Eds.. Proceedings of the 20th World Orchid Conference. . pp. 405-413.
2009
- 2. Monteiro, S.H.N., van den Berg, C. 2009. 438. Galeandra. In: Pridgeon, A.M., Chase, M.W., Cribb, P.J., Rasmussen, F.N. In: . Genera Orchidacearum, 5. Oxford University . pp. 29-32.
- 1. van den Berg, C., Chase, M.W., Whitten, W.M. 2009. Tribe Cymbidieae. Phylogenetics. In: pridgeon, A.M., Chase, M.W., Cribb, P.J., Rasmussen, F.N. In: . Genera Orchidacearum, 5. Oxford University Press. pp. 3-5.